 Publications
Thamdrup, B. and T. Dalsgaard (in press) Nitrogen cycling
in sediments. In: D.E. Kirchman (ed.) Microbial Ecology of the
Oceans 2nd ed., Wiley, New York.
Jensen, M.M., M.M.M. Kuypers, G. Lavik, and B. Thamdrup (in
press)
Rates and regulation of anaerobic ammonium oxidation and denitrification
in the Black Sea. Limnology and Oceanography.
Thamdrup, B. (2007) New players in an ancient cycle. Science,
317:
1508-1509.
Lam
P., M.M. Jensen, G. Lavik, D.F. McGinnis, B. Müller, C.J. Schubert, R.
Amann, B. Thamdrup, and M.M.M. Kuypers (2007) Linking
crenarchaeal and bacterial nitrification to anammox in the Black Sea.
PNAS, doi:10.1073/pnas.0611081104.
Berg, P., D. Swaney, S. Rysgaard, B. Thamdrup, H. Fossing (2007)
A fast numerical solution to the general mass-conservation equation for
solutes and solids in aquatic sediments. Journal of Marine Research,
65: 317-343.
Jensen, M.M., B.
Thamdrup, and T. Dalsgaard (2007)
Effects of specific
inhibitors on anammox and denitrification in marine sediments.
Applied and
Environmental Microbiology,
73: 3151–3158.
Thamdrup, B., Glud, R.N., and Hansen, J.W. (2007) Benthic
carbon cycling in Young Sound, North East Greenland. I: S.
Rysgaard and R.N. Glud (red.), Carbon Cycling in Arctic Marine
Ecosystems: Case Study Young Sound,
Meddelelser om Grønland, Bioscience, 58:138-157.
Schmid, M.C., N. Risgaard-Petersen, J. van de Vossenberg, M.M.M. Kuypers,
G. Lavik, J. Petersen, S. Hulth, B. Thamdrup, D. Canfield, T.
Dalsgaard, S. Rysgaard, M.K. Sejr, M. Strous, H.J.M. Op den Camp, and
M.S.M. Jetten (2007) Anaerobic ammonium-oxidizing bacteria in marine
environments: widespread occurrence but low diversity. Environmental
Microbiology, doi: 10.1111/j.1462-2920.2007.01266.x.
Ferdelman, T.G, B. Thamdrup, D.E. Canfield, R.N. Glud, J. Kuever,
R. Lillebæk, N.B. Ramsing, and C. Wawer (2006) Biogeochemical controls
on the oxygen, nitrogen and sulfur distributionsin the water column of
Golfo Dulce: an anoxic basin on the Pacific coast of Costa Rica
revisited. Revista de Biología Tropical, 54 (Suppl. 1): 171-191.
Thamdrup, B., T. Dalsgaard, M.M. Jensen, O. Ulloa, L. Farías, and
R. Escribano (2006) Anaerobic ammonium oxidation in the oxygen-deficient
waters off northern Chile. Limnology and Oceanography, 51:
2145-2156.
Schubert, C, E. Durisch-Kaiser, B. Wehrli, B. Thamdrup, P. Lam,
and M.M.M. Kuypers (2006) Anaerobic ammonium oxidation in a tropical
freshwater system (Lake Tanganyika). Environmental Microbiology,
doi: 10.1111/j.1462-2920.2006.001074.x
Kuypers, M.M.M., G. Lavik and B. Thamdrup (2006)
Anaerobic ammonium oxidation in the marine environment. I: L.N.
Neretin (ed.) Past and Present Water Column Anoxia, pp. 311-335.
NATO Advanced Science Series IV/64, Springer.
Jensen, M.M., M. Holmer and B. Thamdrup (2005) Composition and diagenesis of combined neutral carbohydrates
in sediments of the Baltic-North Sea transition. Geochimica et
Cosmochimica Acta, 69: 4085-4099.
Habicht, K.S., L. Salling, B. Thamdrup, and
D.E. Canfield (2005) The effect of low sulfate concentrations
on lactate oxidation and isotope fractionation during sulfate reduction
by Archaeoglobus fulgidus strain Z. Applied and Environmental
Microbiology, 71: 3770-3777.
Böttcher, M.E., B. Thamdrup and M. Gehre (2005) 34S/32S and 18O/16O
fractionation during sulfur disproportionation by Desulfobulbus
propionicus. Geomicrobiology Journal, 22: 219-226.
Decker, K., C. Potter, B.M. Bebout, Brad; D.J. Des
Marais, S.P. Carpenter, M. Discipulo, T.M. Hoehler, S. Miller, B.
Thamdrup, K. Turk, P. Visscher (2005) Mathematical
simulation of the diel O, S, and C biogeochemistry of a hypersaline
microbial mat. FEMS Microbiology Ecology, 52: 377-395.
Dalsgaard, T., B. Thamdrup and D.E. Canfield (2005)
Anaerobic ammonium oxidation (anammox) in the marine environment.
Research in Microbiology, 156: 457-464.Hulth, S., R.C. Aller, D.E. Canfield, T. Dalsgaard,
P. Engström, F. Gilbert, K. Sundbäck, and B. Thamdrup (2005) Nitrogen removal in marine environments: recent findings and future research
challenges. Marine Chemistry, 94: 125-145.
Canfield, D.E., E. Kristensen, and B. Thamdrup
(2005) Aquatic Geomicrobiology. Academic Press.
Thomsen, U., B. Thamdrup, D.A. Stahl, and D.E.
Canfield (2004) Pathways of carbon oxidation in a deep lacustrine
sediment, Lake Michigan. Limnology and Oceanography 49:
2046-2057.
Bebout, B.M., T.M. Hoehler, B.
Thamdrup, D. Albert, S.P. Carpenter, M. Hogan, K. Turk, D.J. Des
Marais (2004) Methane Production by microbial mats under low sulfate
concentrations. Geobiology, 2: 87-96.
Berg, P., S. Rysgaard, and B. Thamdrup (2003)
Dynamic
modelling of early diagenesis and nutrient cycling. A case study in an
Arctic marine sediment. American Journal of Science, 303:
905-955.
Jensen, M.M., B. Thamdrup, S. Rysgaard, M.
Holmer, and H. Fossing (2003) Rates and regulation of microbial iron
reduction in sediments of the Baltic-North Sea transition.
Biogeochemistry, 65: 295-317.
Jetten, M.S.M., O. Sliekers, M. Kuypers, T.
Dalsgaard, L. van Niftrik, I. Cirpus, K. van de Pas-Schoonen, G. Lavik,
B. Thamdrup, D. le Paslier, H.J.M. Op den Camp, S. Hulth, L.P.
Nielsen, W. Abma, K. Third, P. Engström, J.G. Kuenen, B.B. Jørgensen,
D.E. Canfield, J.S. Sinninghe-Damsté, N.P. Revsbech, J. Fuerst, J.
weissenbach, M. Wagner, I. Schmidt, M. Schmid, and M. Strous (2003)
Anaerobic ammonium oxidation by marine and freshwater planctomycete-like
bacteria. Applied Microbiology and Biotechnology, 63: 107-114.
Dalsgaard, T., D.E. Canfield, J. Petersen, B.
Thamdrup, and J. Acuña-González (2003) N2 production
by the anammox reaction in the anoxic
water column of Golfo Dulce, Costa Rica. Nature,
422: 606-608.
Habicht, K.S., M. Gade, B. Thamdrup, P. Berg, and D.E. Canfield
(2002) A calibration of sulfate levels in the Archean Ocean.
Science, 298: 2372-2374.
Dalsgaard, T. and B.
Thamdrup (2002) Factors controlling anaerobic ammonium oxidation
with nitrite in marine sediments. Applied and Environmental
Microbiology, 68: 3802-3808.
Thamdrup, B., and T. Dalsgaard (2002) Production of N2 through
anaerobic ammonium oxidation coupled to nitrate reduction in marine
sediments. Applied and Environmental Microbiology, 68: 1312-1318
Böttcher, M.E., B. Thamdrup,
and T.W. Vennemann (2001). Oxygen and sulfur isotope fractionation during
anaerobic bacterial disproportionation of elemental sulfur. Geochimica
et Cosmochimica Acta, 65:1601-1609.
Böttcher, M.E. and B.
Thamdrup (2001).
Anaerobic sulfide oxidation and stable isotope fractionation associated
with bacterial sulfur disproportionation in the presence of MnO2.
Geochimica et Cosmochimica Acta, 65:1573-1581.
G.R. Fones, W. Davison, O. Holby, B.B. Jørgensen, B. Thamdrup
(2001). High resolution metal gradients measured by in situ DGT/DET
deployment in Black Sea sediments using an autonomous benthic lander. Limnol.
Oceanogr. 4:982-988.
Zopfi, J., T.G. Ferdelman, B.B. Jørgensen, A. Teske, and B.Thamdrup.
Influence of water column dynamics on sulfide oxidation and other
major biogeochemical processes in the chemocline of Mariager Fjord
(Denmark). Marine Chemistry, 74:29-51.
Thamdrup, B. and T. Dalsgaard (2000). The fate of ammonium in mangenese
oxide-rich sediment. Geochimica et Cosmochimica Acta, 64:4157-4164. Hansen, J.W., B. Thamdrup, and B.B. Jørgensen
(2000). Anoxic
incubation of sediment in gas-tight plastic bags: a method for
biogeochemical process studies. Marine Ecology Progress Series,
208:273-282.
Glud, R.N., N. Risgaard-Petersen, B. Thamdrup, H. Fossing, S.
Rysgaard (2000). Benthic carbon mineralization in a high-Arctic sound (Young
Sound, NE-Greenland). Marine Ecology Progress Series, 206:45-58.
Thamdrup, B., R. Rosselló-Móra, R. Amann (2000) Microbial
manganese, iron and sulfate reduction in Black Sea shelf sediments. Applied
and Environmental Microbiology, 66:2888-2897.
Canfield, D. E., K. S. Habicht, and B. Thamdrup (2000) The Archean sulfur cycle and the early history of atmospheric oxygen. Science,
288:658-661
Canfield, D. E., K. S. Habicht, and
B. Thamdrup (2000) Response to The Archean atmosphere and sedimentary sulfides. Science, 289:1297-1298.
Thamdrup, B. and D.E. Canfield (2000) Benthic respiration in
aquatic sediments. In: O. Sala, H. Mooney, R. Jackson, and R. Howarth
(eds.), Methods in Ecosystem Science. Springer, New York, p. 86-103
Thamdrup, B. (2000) Microbial manganese and iron reduction in
aquatic sediments. Advances in Microbial Ecology, 16:41-84
Rosselló-Mora, R., B. Thamdrup, H. Schäfer, R. Weller, and R. Amann (1999) Marine sediment microbial community response to organic
carbon ammendation under anaerobic conditions. Systematic and Applied
Microbiology, 22:237-248.
Kostka, J. E., D.E. Canfield, and B. Thamdrup (1999) Rates and
pathways of carbon oxidation in permanently cold Arctic sediments. Marine
Ecology Progress Series, 180:7-21.
Rysgaard, S., B. Thamdrup, N. Risgaard-Petersen, H. Fossing, P.
Berg, P.B. Christensen, and T. Dalsgaard (1998) Seasonal carbon and
nutrient mineralization in a high-Arctic coastal marine sediment, Young
Sound, Northeast Greenland. Marine Ecology Progress Series 175:261-276.
Thamdrup, B. and S. Fleischer (1998) Temperature dependence of
oxygen respiration, nitrogen mineralization, and nitrification in Arctic
sediments. Aquatic Microbial Ecology 15:191-199.
Arnosti, C., J. Sagemann, B.B. Jørgensen, and B. Thamdrup
(1998) Temperature dependence of microbial degradation of organic matter
in marine sediments: polysaccharide hydrolysis, oxygen consumption, and sulfate reduction. Marine Ecology Progress Series 165:59-70.
Canfield, D. E., B. Thamdrup, and S. Fleischer (1998) Isotope
fractionation and sulfur metabolism by pure and enrichment cultures of
elemental sulfur disproportionating bacteria. Limnology and
Oceanography 43:253-264.
Finster, K., W. Liesack, and B. Thamdrup (1998) Elemental sulfur
and thiosulfate dispropotionation by Desulfocapsa sulfoexigens
sp.nov., a new anaerobic bacterium isolated from marine surface sediment. Applied
and Environmental Microbiolology 64: 119-125.
Thamdrup, B., J.W. Hansen, and B.B. Jørgensen. (1998) Temperature
dependence of aerobic respiration in a coastal sediment. FEMS
Microbiology Ecology 25: 189-200.
Ramsing, N.B., H. Fossing, T.G. Ferdelman, F. Andersen, and B.
Thamdrup. (1996) Bacterial distribution in a stratified fjord (Mariager
Fjord, Denmark) quantified by in situ hybridization and related to
chemical gradients in the water column. Applied and Environmental
Microbiology 62:1391-1404.
Canfield, D.E. and B. Thamdrup. (1996) Fate of elemental sulfur
in an intertidal sediment. FEMS Microbiology Ecology 19:95-103.
Thamdrup, B., D.E. Canfield, T.G. Ferdelman, R.N. Glud, and J.K.
Gundersen. (1996) A biogeochemical survey of the anoxic basin Golfo Dulce,
Costa Rica. Revista de Biología Tropical 44, Suppl. 3:19-33.
Thamdrup, B. and D.E. Canfield. (1996) Pathways of carbon oxidation
in continental margin sediments off central Chile. Limnology and
Oceanography 41:1629-1650.
Fossing, H., V.A. Gallardo, B.B. Jørgensen, M. Hüttel, L.P. Nielsen,
H. Schulz, D.E. Canfield, S. Forster, R.N. Glud, J.K. Gundersen, J. Küver,
N.B. Ramsing, A. Teske, B. Thamdrup, and O. Ulloa. (1995)
Concentration and transport of nitrate by the mat-forming sulphur
bacterium Thioploca. Nature 374:713-715.
Moeslund, L., B. Thamdrup, and B.B. Jørgensen. (1994) Sulfur
and iron cycling in a coastal sediment: Radiotracer studies and seasonal
dynamics. Biogeochemistry 27:129-152.
Canfield, D.E. and B. Thamdrup. (1994) The production of 34S-depleted
sulfide during bacterial disproportionation of elemental sulfur. Science
266:1973-1975.
Thamdrup, B., K. Finster, H. Fossing, J.W. Hansen, and B.B.
Jørgensen. (1994) Thiosulfate and sulfite distribution in pore water of
marine sediments related to manganese, iron, and sulfur geochemistry. Geochimica
et Cosmochimica Acta 58:67-73.
Thamdrup, B., R.N. Glud, and J.W. Hansen. (1994) Manganese
oxidation and in situ fluxes from a coastal sediment. Geochimica
et Cosmochimica Acta 58:2563-2570.
Thamdrup, B., H. Fossing, and B.B. Jørgensen. (1994) Manganese,
iron, and sulfur cycling in a coastal marine sediment, Aarhus Bay,
Denmark. Geochimica et Cosmochimica Acta 58:5115-5129.
Jensen, H.S. and B. Thamdrup. (1993) Iron-bound phosphorus in
marine sediments as measured by bicarbonate-dithionite extraction. Hydrobiologia
253:47-59.
Canfield, D.E., B.B. Jørgensen, H. Fossing, R. Glud, J. Gundersen,
N.B. Ramsing, B. Thamdrup, J.W. Hansen, L.P. Nielsen, and P.O.J.
Hall. (1993) Pathways of organic carbon oxidation in three continental
margin sediments. Marine Geology 113:27-40.
Canfield, D.E., B. Thamdrup, and J.W. Hansen. (1993) The
anaerobic degradation of organic matter in Danish coastal sediments: Fe
reduction, Mn reduction and sulfate reduction. Geochimica et
Cosmochimica Acta 57:2563-2570.
Thamdrup, B., K. Finster, J.W. Hansen, and F. Bak. (1993) Bacterial disproportionation of elemental sulfur coupled to chemical reduction of
iron or manganese. Applied and Environmental Microbiology
59:101-108.
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